About PhylomeDB

Contact

PhylomeDB is developed by the Comparative Genomics Group at the Centre for Genomic Regulation (CRG), Barcelona, Spain.

tgabaldon |at| crg.es

How to cite PhylomeDB

Database:

  • Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T. PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. Nucleic Acids Res. 2014, 42(Database issue), D897-902. PMID: 24275491 [Link]
  • Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T. PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. Nucleic Acids Res. 2011, 39(Database issue), D556–60. PMID: 21075798 [Link]
  • Huerta-Cepas J, Bueno A, Dopazo J, Gabaldón T. PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Res. 2008, 36(Database issue):D491-6. PMID: 17962297 [Link]

The original phylogenetic pipeline used to reconstruct phylomes is described in:

  • Huerta-Cepas J, Dopazo H, Dopazo J, Gabaldón T. The human phylome. Genome Biol. 2007;8(6):R109. PMID: 17567924 link

Specific phylome releases and datasets:

Please, check for associated publications of each phylome

 

PhylomeDB team

People involved in the design, development and maintenance of PhylomeDB are:

(Past members and contributors)